Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs5994306 chr22:30825696 A/C 5.46E-5 252 35.57 26.35 14.23 KM Plot
SARC rs6000316 chr22:36934015 C/T 4.82E-5 255 31.77 35.67 18.28 KM Plot
SARC rs60235173 chr3:159814188 G/A 1.6E-12 258 32.3 30.3 3.1 KM Plot
SARC rs60412119 chr6:133210388 A/G 3.51E-6 253 32.3 28.63 14.95 KM Plot
SARC rs60653314 chr2:70213513 C/T 4.88E-8 248 33.2 31.27 10.72 KM Plot
SARC rs60887045 chr3:52992278 C/A 2.18E-14 254 30.93 34.57 1.17 KM Plot
SARC rs60889002 chr3:39168308 T/A 7.64E-5 254 29.87 36.27 12.17 KM Plot
SARC rs60942590 chr3:53016421 G/A 2.21E-14 257 30.85 34.57 1.17 KM Plot
SARC rs61099456 chr4:80238591 CA/C 1.31E-13 255 33.48 27.37 3.58 KM Plot
SARC rs61172708 chr3:52996052 T/G 2.18E-14 254 30.93 34.57 1.17 KM Plot
SARC rs612051 chr3:15075360 C/T 2.87E-7 258 32.3 28.48 4.63 KM Plot
SARC rs614668 chr11:34968523 A/G 3.49E-5 253 21.6 29.88 34.47 KM Plot
SARC rs616428 chr1:182453955 C/T 1.86E-7 256 31.1 35.13 6.72 KM Plot
SARC rs61655286 chr4:42061599 AAT/A 1.27E-5 256 33.95 31.42 13.43 KM Plot
SARC rs61788009 chr1:116917485 G/A 5.06E-14 252 32.6 30.32 1.17 KM Plot